Fix bug where clean up shortcut wouldn't clear articles if wrong setting was off.

iOS/AppDelegate.swift

@@ -135,7 +135,7 @@ class AppDelegate: UIResponder, UIApplicationDelegate, UNUserNotificationCenterD
 	
 	func manualRefresh(errorHandler: @escaping (Error) -> ()) {
 		UIApplication.shared.connectedScenes.compactMap( { $0.delegate as? SceneDelegate } ).forEach {
-			$0.cleanUp()
+			$0.cleanUp(conditional: true)
 		}
 		AccountManager.shared.refreshAll(errorHandler: errorHandler)
 	}

iOS/RootSplitViewController.swift

@@ -91,7 +91,7 @@ class RootSplitViewController: UISplitViewController {
 	}
 
 	@objc func cleanUp(_ sender: Any?) {
-		coordinator.cleanUp()
+		coordinator.cleanUp(conditional: false)
 	}
 	
 	@objc func toggleReadFeedsFilter(_ sender: Any?) {

iOS/SceneCoordinator.swift

@@ -572,11 +572,11 @@ class SceneCoordinator: NSObject, UndoableCommandRunner, UnreadCountProvider {
 		fetchRequestQueue.cancelAllRequests()
 	}
 	
-	func cleanUp() {
+	func cleanUp(conditional: Bool) {
 		if isReadFeedsFiltered {
 			rebuildBackingStores()
 		}
-		if isReadArticlesFiltered && AppDefaults.refreshClearsReadArticles {
+		if isReadArticlesFiltered && (AppDefaults.refreshClearsReadArticles || !conditional) {
 			refreshTimeline(resetScroll: false)
 		}
 	}

iOS/SceneDelegate.swift

@@ -84,8 +84,8 @@ class SceneDelegate: UIResponder, UIWindowSceneDelegate {
 		coordinator.suspend()
 	}
 	
-	func cleanUp() {
-		coordinator.cleanUp()
+	func cleanUp(conditional: Bool) {
+		coordinator.cleanUp(conditional: conditional)
 	}
 	
 }